IQ-TREE multicore version 2.0.3 for Linux 64-bit built Apr 26 2020
Developed by Bui Quang Minh, Nguyen Lam Tung, Olga Chernomor,
Heiko Schmidt, Dominik Schrempf, Michael Woodhams.

Host:    cn34 (AVX2, FMA3, 125 GB RAM)
Command: /home/smg655/.conda/envs/iqtree/bin/iqtree -t All_Species_m2_AllMapped_edited.nwk -s All_Species_m2_intergenic.nexus --scf 100 --prefix concord_intergenic_ref -T 2
Seed:    773132 (Using SPRNG - Scalable Parallel Random Number Generator)
Time:    Mon May  3 11:23:25 2021
Kernel:  AVX+FMA - 2 threads (2 CPU cores detected)

Reading alignment file All_Species_m2_intergenic.nexus ... Nexus format detected
Alignment has 26 sequences with 746722 columns, 217762 distinct patterns
738092 parsimony-informative, 0 singleton sites, 8630 constant sites
        Gap/Ambiguity  Composition  p-value
   1  ActMar    1.55%    failed      0.00%
   2  AldGig    1.65%    failed      0.00%
   3  ApaSpi    2.96%    passed     43.81%
   4  BatTri   49.47%    failed      0.00%
   5  CarIns   10.84%    failed      0.00%
   6  CheAbi    6.46%    failed      0.00%
   7  CheMyd    0.88%    failed      0.00%
   8  CheSer    3.27%    failed      0.00%
   9  ChrPic    0.39%    failed      0.00%
  10  CuoAmb    2.25%    failed      0.00%
  11  CuoMcc    0.82%    failed      0.00%
  12  DerCor    1.70%    failed      0.00%
  13  DerMaw    2.39%    passed     35.64%
  14  EmyOrb   41.52%    failed      0.00%
  15  EmySub    2.24%    failed      0.00%
  16  GopAga    0.94%    failed      0.00%
  17  MalTer    7.18%    failed      0.00%
  18  MauRee    0.64%    failed      0.00%
  19  MesTub    3.63%    failed      0.00%
  20  PelCas    5.35%    failed      0.00%
  21  PelSin    3.57%    passed     19.88%
  22  PlaMeg    0.82%    failed      0.00%
  23  PodExp   12.01%    failed      0.00%
  24  SteCar    3.27%    failed      0.00%
  25  TerCar    1.96%    failed      0.00%
  26  TraScr    0.75%    failed      0.00%
****  TOTAL     6.48%  23 sequences failed composition chi2 test (p-value<5%; df=3)
Reading tree All_Species_m2_AllMapped_edited.nwk ...
un-rooted tree with 26 taxa and 49 branches
Computing site concordance factor...
8.314 sec
Tree with concordance factors written to concord_intergenic_ref.cf.tree
Annotated tree (best viewed in FigTree) written to concord_intergenic_ref.cf.tree.nex
Tree with branch IDs written to concord_intergenic_ref.cf.branch
Concordance factors per branch printed to concord_intergenic_ref.cf.stat
Date and Time: Mon May  3 11:23:41 2021
